PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0216s00210.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 197aa    MW: 22235.3 Da    PI: 7.9955
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0216s00210.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP241.82.7e-131257254
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54
                      +y+GVr+++ +g+++AeI+dp+++g   r++lg+f+     aka+++ + +l 
  Vang0216s00210.1 12 HYRGVRQRP-WGKFAAEICDPNKRG--SRVWLGTFDI----AKAYDRVAFRLC 57
                      8********.**********96655..**********....888888887775 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.96E-211166No hitNo description
Gene3DG3DSA:3.30.730.103.4E-231167IPR001471AP2/ERF domain
PfamPF008477.6E-91250IPR001471AP2/ERF domain
SMARTSM003801.9E-221272IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-141267IPR016177DNA-binding domain
PROSITE profilePS5103216.3441266IPR001471AP2/ERF domain
PRINTSPR003672.9E-101324IPR001471AP2/ERF domain
PRINTSPR003672.9E-104868IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MVLLENRPEN KHYRGVRQRP WGKFAAEICD PNKRGSRVWL GTFDIAKAYD RVAFRLCGSK  60
AILKFPLEAS VVEEAADAEG EKKQRHEEEE VEEVKPVVKK EKTTEQEVNC FREFSEVPKV  120
ANFPSYVKEL ASLFSGADGH HEHRRDLVRA GYLRVGRFKI PLDGSLYGEL DATLGLNEHG  180
KGMDLCSINP NHLGKK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-25973270ATERF1
3gcc_A4e-25973270ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014507066.14e-42PREDICTED: ethylene-responsive transcription factor 5-like
TrEMBLA0A0L9VFB34e-53A0A0L9VFB3_PHAAN; Uncharacterized protein
STRINGGLYMA17G15460.11e-34(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.11e-28ethylene responsive element binding factor 5